species:   Cocin
pid:       PID1285
parent:    cci-milR-30
paralog:   
locus:     scaffold_45:38266-38321
matures:   ['AGGACGAGGACGAGGACGAGGAC', 'UUUUGUUCUGUUUUUGGAUACCCUCG']
srr:       SRR9972094
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram scaffold_45:38266-38321

3 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

***********************    **************************** 
AGGACGAGGACGAGGACGAGGACGCUAGUUUUUGUUCUGUUUUUGGAUACCCUCGG
....(((((((.(((((((((((....))))))))))))))))))...........
AGGACGAGGACGAGGACGAGGAC--------------------------------- l=23 a=0 c
-----------------------------UUUUGUUCUGUUUUUGGAUACCCUCG- l=26 a=0 c*
------------------AGGACGCUAGUUUUUGUUCU------------------ l=20 a=1 ma
-----------------------------UUUUGUUCUGUUUUUGGAUACCCUCG- l=26 a=0 ma*

------------------AGGACGCUAGUUUUUGUUCU------------------ l=20 a=1 (ma)
------------AGGACGAGGACGCU------------------------------ l=14 a=1 
AaGACGAGGACGAGGACGAGGACG-------------------------------- l=24 a=1 

mb-00010
ax-1001011
ku-01
ss-100111101000
fn-011
